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BioQL Quantum Computing Quantum Overlay Quantum Overlay
βš›οΈ Version 7.0.4 - QPHAROS Integration

Quantum Computing for Drug Discovery and more

Enterprise-grade quantum platform for molecular docking, binding affinity prediction, ADME/Tox analysis, and CRISPR gene editing optimization. Natural language interface powered by real quantum hardware.

133+
Quantum Qubits
11
Discovery Modules
5
Quantum Backends
99.9%
QEC Fidelity
quantum_drug_discovery.py
from bioql import quantum

# Natural language quantum programming
result = quantum(
    "dock aspirin to COX-1 and predict binding affinity",
    backend='ibm_quantum',
    api_key='your_api_key',
    shots=4096
)

# Results with quantum advantage
print(f"Binding Energy: {result.binding_energy} kcal/mol")
print(f"Affinity Kd: {result.affinity_kd} nM")
print(f"Drug-likeness: {result.lipinski_compliant}")

Get Started in Seconds

Install BioQL via PyPI and start running quantum computations

πŸ“¦

Install from PyPI

pip install bioql
βœ…

Verify Installation

import bioql
print(bioql.__version__)
# 7.0.3

Latest version: 7.0.3 β€’ Python 3.8+ β€’ View on PyPI β†’

Quantum Computing Meets Drug Discovery

Real quantum hardware processing molecular structures at unprecedented scale

Quantum Computing Hardware

133-Qubit IBM Quantum

Real quantum hardware for molecular simulations

Quantum Laboratory

Enterprise Quantum Lab

Production-grade quantum infrastructure

βš›οΈ
133+
Quantum Qubits
πŸ”¬
5
Quantum Backends
⚑
10x
Faster vs Classical
🎯
99.9%
QEC Fidelity
New in v7.0.3

Multi-Omics Platform

Integrate genomics, proteomics, metabolomics, and transcriptomics with quantum algorithms

πŸ§ͺ

Proteomics

Quantum-enhanced protein sequence analysis, PTM site prediction, and protein-protein interaction mapping.

  • βœ“ PTM prediction (85%+ accuracy)
  • βœ“ Protein structure analysis
  • βœ“ Domain and motif identification
  • βœ“ Stability prediction
πŸ”¬

Metabolomics

MS/MS spectral matching, metabolic pathway analysis, and flux prediction using quantum optimization.

  • βœ“ Quantum similarity search
  • βœ“ QAOA pathway flux analysis
  • βœ“ HMDB/KEGG integration
  • βœ“ Biomarker discovery
🧬

Multi-Omics Integration

Cross-layer correlation analysis, pathway enrichment, and network-based biomarker discovery.

  • βœ“ Quantum correlation analysis
  • βœ“ Multi-layer pathway enrichment
  • βœ“ Network reconstruction
  • βœ“ Disease subtyping
πŸ“Š

Advanced Genomics

Quantum-enhanced variant calling, RNA-seq analysis, and genome-wide association studies.

  • βœ“ High-accuracy variant calling
  • βœ“ Differential expression (QML)
  • βœ“ GWAS analysis
  • βœ“ Structural variant detection

Why Choose BioQL?

The most complete quantum drug discovery platform with proven results

🧬

Natural Language Interface

Write drug discovery workflows in plain English. No quantum gates knowledge required. 164B+ NLP patterns.

  • βœ“ Zero quantum programming experience needed
  • βœ“ Automatic circuit optimization
  • βœ“ Context-aware semantic parsing
βš›οΈ

Real Quantum Hardware

Run on IBM Torino (133 qubits), IonQ trapped ions, Google Cirq, Azure Quantum, and AWS Braket.

  • βœ“ Multi-backend support
  • βœ“ Automatic error mitigation (ZNE, PEC)
  • βœ“ Quantum Error Correction (QEC)
πŸ’Š

Complete Drug Pipeline

7 production-ready modules: Docking, Binding Affinity, ADME, Toxicity, Pharmacophore, Protein Folding, De Novo Design.

  • βœ“ Validated vs. experimental data
  • βœ“ 50+ biochemical constants
  • βœ“ Real Vina docking integration
  • βœ“ Quantum-enhanced molecule generation
πŸ”¬

CRISPR-QAI Module

Quantum-enhanced CRISPR guide RNA optimization with off-target prediction and phenotype inference.

  • βœ“ Guide sequence encoding
  • βœ“ Energy collapse estimation
  • βœ“ Multi-backend support
πŸ“Š

Enterprise Compliance

21 CFR Part 11 aligned provenance logging, cryptographic audit trails, and full reproducibility tracking.

  • βœ“ Signed execution records
  • βœ“ Compliance dashboards
  • βœ“ Export to regulatory formats
⚑

Performance Optimized

Smart caching (24x speedup), job batching (30% cost savings), circuit optimization (35% gate reduction).

  • βœ“ <5% profiling overhead
  • βœ“ Interactive HTML dashboards
  • βœ“ Automatic cost optimization

Drug Discovery Modules

Production-ready quantum algorithms for every stage of drug development

01

Molecular Docking

Predict ligand-receptor binding poses with quantum advantage

Accuracy Β±0.3 kcal/mol
Poses 20+ per run
from bioql.circuits import MolecularDockingCircuit

docking = MolecularDockingCircuit(
    ligand_smiles='CC(=O)OC1=CC=CC=C1C(=O)O',
    receptor_pdb='cox1.pdb',
    num_poses=20
)

result = docking.run_docking(shots=4096)
print(result.best_energy)  # -8.5 kcal/mol
02

Binding Affinity

VQE-based quantum chemistry for precise Kd/Ki calculation

Range 0.01-100 Β΅M
Parameters Ξ”G, Kd, Ki, IC50
from bioql.circuits import BindingAffinityCircuit

circuit = BindingAffinityCircuit(
    ligand_smiles="CC(=O)OC1=CC=CC=C1C(=O)O",
    receptor_pdb="protein.pdb",
    n_qubits=12,
    vqe_depth=3
)

result = circuit.estimate_affinity()
print(result.binding_affinity_kd)  # 1.45 nM
03

ADME Prediction

Quantum ML for pharmacokinetics: Absorption, Distribution, Metabolism, Excretion

Accuracy RΒ² = 0.82
Properties 6+ parameters
from bioql.circuits import ADMECircuit

circuit = ADMECircuit(
    molecule_smiles="CC(=O)OC1=CC=CC=C1C(=O)O"
)

result = circuit.batch_predict()
print(result.bioavailability)  # 65.3%
print(result.half_life)  # 4.2 hours
04

Toxicity Prediction

Multi-endpoint toxicity screening with quantum classifiers

Endpoints 5 toxicity types
AUC-ROC 0.88 avg
from bioql.circuits import ToxicityPredictionCircuit

circuit = ToxicityPredictionCircuit(
    molecule_smiles="c1ccccc1N(=O)=O"
)

result = circuit.predict_toxicity()
print(result.overall_risk)  # 0.65 (high)
print(result.alerts)  # ['nitro_aromatic']
05

Pharmacophore Modeling

3D feature extraction for virtual screening and lead optimization

Features 5 types
Conformers 20+ analyzed
from bioql.circuits import PharmacophoreCircuit

circuit = PharmacophoreCircuit(
    molecule_smiles="CC(=O)OC1=CC=CC=C1C(=O)O",
    n_conformers=20
)

model = circuit.generate_pharmacophore()
print(model.features)  # H-bond donors/acceptors...
06

Protein Folding

QAOA-based optimization for tertiary structure prediction

Algorithm QAOA
Lattice 2D/3D
from bioql.circuits import ProteinFoldingCircuit

folding = ProteinFoldingCircuit()
circuit = folding.build(
    sequence_length=10,
    lattice_dimensions=2,
    qaoa_layers=3
)

result = folding.optimize()
print(result.folding_energy)
07

De Novo Drug Design

Quantum-enhanced generation of novel drug-like molecules from scratch

Scaffolds 4 types
Validation Lipinski + PAINS
from bioql import quantum

# Design new drug for specific target
result = quantum(
    "design new GLP-1 agonist with high bioavailability",
    backend='ibm_quantum',
    api_key='your_key',
    shots=4096
)

print(result.designed_molecules)  # Novel drug candidates
print(result.best_molecule.smiles)  # Top candidate
Quantum Computing Chip

Multi-Backend Quantum Ecosystem

Run on the world's most advanced quantum computers

IBM Quantum

Device IBM Torino
Qubits 133
Technology Superconducting
Production Ready

IonQ Aria

Device IonQ Aria
Qubits 25
Technology Trapped Ions
Production Ready

Google Cirq

Platform Cirq + Sycamore
Qubits 70+
Technology Superconducting
Production Ready

Azure Quantum

Platform Azure Quantum
Providers Multiple
Technology Cloud Access
Production Ready

AWS Braket

Platform Amazon Braket
Providers Rigetti, IonQ, D-Wave
Technology Multi-tech
Production Ready

Local Simulator

Platform Qiskit Aer
Qubits 30+
Technology Classical Simulation
Always Available
πŸ›‘οΈ Fault-Tolerant Quantum Computing

Quillow Quantum Error Correction

Production-ready surface code implementation that achieves below-threshold operation with exponential error suppression for your quantum chemistry calculations.

βš›οΈ

Surface Code QEC

Rotated surface codes with distances d=3, 5, 7, 9. Higher distances = exponentially better protection.

d=5 β†’ 10x error suppression
⚑

Real-Time Decoding

MWPM decoder with <100ΞΌs latency. Micro-batched processing for high throughput.

20K-200K shots/sec
🧬

BioQL Integration

Seamless protection for VQE, molecular docking, and quantum chemistry workflows.

One-line integration
🎯

Multi-Backend

Works with Stim, BioQL API, IBM Quantum, IonQ, and Modal GPU acceleration.

5 backends supported

Get Started with Quillow

πŸ›‘οΈ Learn More About Quillow πŸ“– View Documentation
pip install quillow

Pay-Per-Shot Pricing

Pay only for the quantum shots you execute. No subscriptions, no hidden fees.

πŸ’³ Secure Payments via Stripe

All billing managed through Stripe. Usage tracked in real-time. Pay as you go.

Quantum Backend Pricing

Choose your backend and pay per shot executed

Backend Qubits Price/Shot 1000 Shots
πŸ–₯️ Simulators
IonQ Ideal Simulator 29q $0.01 $10
AWS SV1 Simulator 34q $0.01 $10
AWS TN1 Simulator 50q $0.02 $20
βš›οΈ Quantum Hardware
IBM Torino 133q $3.00 $3,000
IBM Brisbane 127q $3.00 $3,000
IonQ Forte 36q $3.00 $3,000
IonQ QPU 36q $2.00 $2,000
QuEra Aquila 256q $5.00 $5,000
πŸ’‘ How It Works

You're charged per shot executed based on the quantum backend you choose. Simulators cost $0.01-0.02 per shot, while quantum hardware ranges from $2-5 per shot. All billing is handled securely through Stripe with real-time usage tracking. No minimum commitment required.

Get Started Now

Free tier: 100 shots/month β€’ No credit card required for testing

🧬 Interactive Notebook

BioQL Lab Notebook

A collaborative, Jupyter-style notebook for quantum biology research with real-time execution, AI assistance, and automatic paper generation

What is BioQL Lab Notebook?

BioQL Lab Notebook is a modern, web-based computational notebook designed specifically for quantum biology and drug discovery workflows. It combines the familiar notebook interface with powerful quantum computing capabilities, real-time collaboration, and AI-powered assistance.

πŸ“

Multi-Cell Support

Create notebooks with Code cells (Python/BioQL), Markdown cells for documentation, and dedicated @BioQL cells for quantum queries. Mix and match to create comprehensive research narratives.

⚑

Real-Time Execution

Execute BioQL commands directly in your browser and see results instantly. Connect to quantum backends, run molecular docking simulations, and analyze results without leaving your notebook.

🀝

Real-Time Collaboration

Work together with your team in real-time. See cursor positions, live edits, and share insights instantly via WebSocket connections. Perfect for distributed research teams.

πŸ€–

AI Lab Assistant

Built-in AI assistant helps write BioQL queries, suggests next experimental steps, finds relevant papers, and explains complex quantum concepts. Like having a computational biology expert at your fingertips.

πŸš€ Launch Lab Notebook

How to Use

1

Create or Open a Notebook

Click "New Notebook" or select an existing notebook from the sidebar. Choose from pre-built templates for protein analysis, drug discovery, or multi-omics workflows.

2

Add and Configure Cells

Add cells with the "+" button. Choose between Code (Python), Markdown (documentation), or @BioQL (quantum queries). Use Monaco Editor with syntax highlighting and autocomplete.

3

Execute Quantum Commands

Write BioQL queries like @bioql dock aspirin to COX-2 and run cells with ▢️. Results appear instantly with formatted JSON output.

4

Visualize & Export Results

View 3D molecular structures in the built-in viewer. Export your entire notebook as a scientific paper (Markdown, LaTeX, or PDF) with one click.

5

Collaborate & Share

Invite collaborators via the Share button. They'll see your cursor, edits in real-time, and can contribute simultaneously. Version history tracks all changes.

✨ Key Features

  • Monaco Editor: Full IDE experience with IntelliSense
  • 3Dmol.js Integration: Interactive molecular visualization
  • Auto-save: Never lose your work (saves every 30s)
  • Templates Library: Pre-built workflows for common tasks
  • Paper Generator: Convert notebooks to publications
  • API Access: Full REST API for automation

Example Use Cases

🧬

Protein Structure Analysis

Document your entire protein analysis pipeline: fetch sequences from PDB, predict structure with quantum algorithms, analyze binding sites, and generate publication-ready figures.

πŸ’Š

Drug Discovery Workflows

Run complete drug discovery pipelines: molecular docking, binding affinity calculations, ADME/Tox predictions, and hit-to-lead optimization. Track everything in one notebook.

πŸ”¬

Multi-Omics Integration

Combine genomics, proteomics, and metabolomics data. Run quantum correlation analysis, pathway enrichment, and generate comprehensive multi-omics reports.

βœ‚οΈ

CRISPR Design & Optimization

Design guide RNAs, predict off-target effects with quantum algorithms, optimize delivery vectors, and document your entire gene editing strategy.

βš›οΈ Quantum Visualization Platform

Quantum Graphs

Revolutionary quantum-enhanced scientific visualization with automatic parameter optimization. No quantum expertise required.

What is Quantum Graphs?

Quantum Graphs is an intelligent visualization engine that uses quantum computing to generate high-fidelity computational images for biotechnology research. The revolutionary Adaptive Quantum Optimizer automatically determines the optimal configurationβ€”qubits, shots, QEC codes, and backendβ€”without requiring any quantum expertise.

πŸ€– 100% Automatic Optimization

You provide molecular data. Quantum Graphs automatically calculates:

  • βœ“ Logical & Physical Qubits (based on molecular complexity)
  • βœ“ Measurement Shots (optimized for 95% accuracy)
  • βœ“ QEC Code (Surface Code with adaptive distance)
  • βœ“ Quantum Backend (IBM, Azure, AWS, or Simulator)
  • βœ“ Cost & Time Estimates (before execution)
βš›οΈ Launch Quantum Graphs πŸ“š API Documentation

Visualization Capabilities

🧬

Protein Structures

3D visualization, secondary structure analysis, folding pathways, conformational sampling with quantum algorithms (QAOA)

πŸ’Š

Drug Design

Molecular docking, binding affinity prediction, ADME visualization, drug-target interaction maps

πŸ”¬

Metabolomics

Metabolic pathway networks, flux balance analysis, concentration heatmaps, biomarker discovery

🎨

Quantum Chemistry

Electron density maps, molecular orbitals, energy landscapes with VQE, reaction pathways

πŸ§ͺ

Antibody Engineering

Antibody-antigen binding visualization, CDR analysis, affinity optimization

πŸ’° Transparent Pricing

Free Tier: 10 visualizations/month (simulator, up to 100 atoms, 1000 shots)

Paid Plans: Pay-as-you-go based on:

  • β€’ Backend used (IBM: $1.20/qubit-h, Azure: $1.50/qubit-h, AWS: $1.00/qubit-h)
  • β€’ Visualization type ($0.50-$3.50 base fee)
  • β€’ Shots executed ($0.45-$0.60/1000 shots)
  • β€’ QEC overhead (1.2x-4.0x multiplier)

Cost Estimate Before Execution - You'll know the exact price before running any job!

Example Quantum-Enhanced Visualizations

βš›οΈ

Antibody (150kDa)

10,000 atoms

24 qubits β€’ 5,000 shots

IonQ Forte β€’ $15,000

πŸ”¬

Glycolysis Network

10 metabolites

12 qubits β€’ 3,000 shots

IBM Torino β€’ $9,000

πŸ’Š

TKI Inhibitor

30 atoms

8 qubits β€’ 1,000 shots

IonQ Simulator β€’ $10

🧬

Protein Folding

200 residues

18 qubits β€’ 4,000 shots

IonQ QPU β€’ $8,000

Visual Workflow Builder

BioQL Workflow Studio

Design complex quantum drug discovery pipelines with drag-and-drop simplicity

Build, Execute, and Monitor Quantum Workflows

A powerful visual interface for creating multi-step quantum computing workflows. Connect nodes, configure parameters, and execute complex drug discovery pipelines without writing a single line of code.

🎨

Visual Canvas

Drag-and-drop interface with real-time connection preview and smart node placement

⚑

Async Execution

Background job processing with real-time queue monitoring and progress tracking

πŸ”¬

15+ Quantum Nodes

Molecular docking, ADME prediction, protein folding, drug discovery, and custom code execution

πŸ’Ύ

Data Pipeline

Save experiment results and chain multiple analyses for comprehensive drug discovery

πŸ–₯️

Multi-Backend

Execute on IBM Quantum, IonQ, AWS Braket, and local simulators from one interface

πŸ“Š

Rich Outputs

Structured results with visualization data, quantum counts, and exportable formats

Key Capabilities

  • Custom Python Code Node: Execute your own quantum algorithms with full access to Qiskit, Cirq, and BioQL
  • Smart Auto-Configuration: Global settings propagate to all nodes with intelligent default values
  • Job Monitoring: Real-time queue position, estimated wait time, and execution status for quantum hardware
  • Data Storage: Save intermediate results in JSON, CSV, or Pickle format for reproducible research
  • Workflow Templates: Save, load, and share complete workflows for common drug discovery tasks
  • No Timeout Issues: Automatic async execution handles long quantum queues without connection drops
drug_discovery_pipeline.bioql
πŸ“ Upload Molecule
SMILES: CCO
🧬 Vina Docking
Backend: ibm_torino
⏳ Running
πŸ’Š ADME Prediction
Properties: all
πŸ’Ύ Data Storage
Format: JSON
πŸ”¬ Quantum Jobs
Vina Docking
Queue: #3 | Est: 12 min
Quantum Laboratory

Try BioQL Now

No installation required. Run quantum drug discovery in your browser.

Results Execution time: 2.3s
{
  "binding_energy": -8.5,
  "affinity_kd": 1.45,
  "best_pose": {
    "rotation": [0.12, 0.45, 0.89],
    "translation": [2.3, -1.2, 0.5]
  },
  "lipinski_compliant": true,
  "quantum_advantage": "2.3x speedup vs classical"
}
TRY FREE NOW!

Experiment with the BioQL Simulator

Use our sandbox API key to run unlimited simulations on the BioQL quantum simulator. Perfect for prototyping before moving to live hardware.

Sandbox API Key

This key only works with the simulator backend and never consumes your paid balance.

API Key
bioql_fa389901656bb996c17117b168495985
  • Unlimited requests against the simulator backend.
  • No Stripe account required for this sandbox key.
  • Upgrade any time to unlock IBM Quantum, IonQ, and AWS Braket hardware.

Quick Start

  1. export BIOQL_API_KEY="bioql_fa389901656bb996c17117b168495985"
  2. Target the simulator backend in every request:
    "backend": "simulator"
  3. Send your query to the public endpoint below.
cURL Example
curl https://api.bioql.bio/api/quantum/execute  -H "Content-Type: application/json"  -d '{
   "program": "dock aspirin to COX-1",
   "api_key": "bioql_fa389901656bb996c17117b168495985",
   "backend": "simulator",
   "shots": 1024
 }'

βœ… Responses include counts, binding estimates, and BioQL annotations. Switch to a paid plan when you're ready for real hardware.

Latest from Our Blog

Stay updated with the latest news, tutorials, and insights on quantum computing for drug discovery

πŸ”Ά
October 30, 2025 Product Launch

Introducing QPHAROS v1.1.0: 5-Layer Quantum Drug Discovery

We're excited to announce QPHAROS, our new quantum pharmaceutical optimization system with 4 usage schemas for all expertise levels...

Read More
πŸ€–
October 30, 2025 Agent Update

BioQL Agent v7.0.4: QPHAROS Code Generation in VS Code

The BioQL VS Code Agent now supports automatic QPHAROS code generation! Type natural language prompts and get production-ready quantum code...

Read More
πŸ›‘οΈ
October 27, 2025 Technology

Quillow: Google Willow-Style Quantum Error Correction

Learn how our Quillow QEC engine implements Surface Codes with real-time MWPM decoding, achieving below-threshold operation on noisy quantum hardware...

Read More
View All Blog Posts